Hi aleroNY,
In "batch mode," the output of multiple source files is compiled into single assemblies according to the type of file, file dependencies, and other criteria. The result is a target site containing a set of assemblies with the executable code for the original source files. I think multiple MasterPage files sharing the same name "MyMasterPageName_master" might cause the issue.
Zhao Ji Ma
Sincerely,
Microsoft Online Community Support
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